IJPAM: Volume 117, No. 1 (2017)

Title

THE EFFECT OF STATISTICAL ERROR MODEL
FORMULATION ON THE FIT AND SELECTION OF
MATHEMATICAL MODELS OF TUMOR GROWTH
FOR SMALL SAMPLE SIZES

Authors

H.T. Banks$^1$, Kidist Bekele-Maxwell$^2$, Judith E. Canner$^3$,
Amanda Mayhall$^4$, Jennifer Menda$^5$, Marcella Noorman$^6$
$^{1,2,4,5,6}$Center for Research in Scientific Computation
Department of Mathematics
North Carolina State University
Raleigh, NC 27695-8212, USA
$^3$Department of Mathematics and Statistics
California State University
Monterey Bay, Seaside, CA 93955, USA

Abstract

When fitting a mathematical model to a given data set using inverse problems, the correctness of both the mathematical model and the statistical error models are important since an incorrect statistical or observational model directly affects both the estimates and their corresponding standard errors. The effects of these models, among many other factors, are dependent on the sample size and the information content of the data set.

In this article, we investigate how the choice of the statistical error model affects the mathematical model fit and accuracy of parameter estimates in small sample size tumor growth data sets. We specifically seek to determine the appropriate statistical error model for small sample size breast, lung and HPV tumor growth data sets obtained from studies on mice.

We find that for small sample sizes the selection of the best statistical error model is not straightforward and requires the examination of multiple criteria for model fit and uncertainty. Therefore, selection of the best mathematical model is not an easy process for small sample size tumor data and selection of a model based on few data points may not prove accurate. We encourage further research on the optimal design of experiments (duration and number of observations) in order to best fit mathematical models to tumor growth data.

History

Received: 2017-10-28
Revised: 2017-12-01
Published: December 12, 2017

AMS Classification, Key Words

AMS Subject Classification: 65L09, 92C50, 62P10, 49N45
Key Words and Phrases: tumor growth models, mathematical and statistical models, sensitivity, complex-step method, residual analysis

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Bibliography

1
H.T. Banks, K. Bekele-Maxwell, L. Bociu, M. Noorman and K. Tillman, The complex-step method for sensitivity analysis of non-smooth problems arising in biology, Eurasian Journal of Mathematical and Computer Applications, 3 (2015), 15-68.

2
H.T. Banks, K. Bekele-Maxwell, L. Bociu, and C. Wang, Sensitivity via the complex-step method for delay differential equations with non-smooth initial data, CRSC-TR16-09, Center for Research in Scientific Computation, N. C. State University, Raleigh, NC, July, 2016, Quarterly of Applied Mathematics, November 2, 2016, doi: https://doi.org/10.1090/qam/1458.

3
H.T. Banks, Kidist Bekele-Maxwell, Judith E. Canner, Amanda Mayhall, Jennifer Menda, and Marcella Noorman, The effect of statistical error model formulation on the fit and selection of mathematical models of tumor growth for small sample sizes, CRSC-TR17-26, Center for Research in Scientific Computation, N. C. State University, Raleigh, NC, November, 2017.

4
H. T. Banks, J. Catenacci, and S. Hu, Use of difference-based methods to explore statistical and mathematical model discrepancy in inverse problems, Journal of Inverse and Ill-posed Problems, 24 (2016), 413-433.

5
H.T. Banks, S. Hu, and W.C. Thompson, Modeling and Inverse Problems in the Presence of Uncertainty, Chapman $\&$ Hall/CRC Press, Boca Raton, FL, 2014.

6
H.T. Banks and Michele L. Joyner, AIC under the framework of least squares estimation, CRSC-TR17-09, Center for Research in Scientific Computation, N. C. State University, Raleigh, NC, May, 2017; Applied Math Letters, to appear.

7
H.T. Banks and Michele L. Joyner, Information content in data sets: A review of methods for interrogation and model comparison, CRSC-TR17-15, Center for Research in Scientific Computation, N. C. State University, Raleigh, NC, June, 2017; J. Inverse and Ill-Posed Problems, submitted.

8
H. T. Banks and H. T. Tran, Mathematical and Experimental Modeling of Physical and Biological Processes, CRC Press, Boca Raton, FL, 2009.

9
S. Benzekry, C. Lamont, B. Afshin, A. Tracz, JML Ebos, et al. , Classical mathematical models for description and prediction of experimental tumor growth. PLoS Comput Biol. 10(8) (2014): e1003800, doi: https://doi.org/10.1371/journal.pcbi.1003800.

10
K.P. Burnham and D.R. Anderson, Information and Likelihood Theory: A Practical Information-Theoretic Approach, Springer-Verlag, New York, 2002.

11
M. Davidian and D.M. Giltinan, Nonlinear Models for Repeated Measurement Data, Chapman and Hall, London, 2000.

12
A. Ronald Gallant, Nonlinear Statistical Models, John Wiley and Sons, New York, 1987.

13
D. Hart, E.Shochat, and Z. Agur, The growth law of primary breast cancer as inferred from mammography screening trials data. British Journal of Cancer, 78(3), (1998) 382.

14
C. Loizides, D. Lacovides, M.M. Hadjiandreou, G. Rizki, A. Achilleos, K. Strati, et al. Model-based tumor growth dynamics and therapy response in a mouse model of de novo carcinogenesis. PLoS ONE, 10(12) (2015): e0143840, doi: https://doi.org/10.1371/journal.pone.0143840.

15
J. N. Lyness, Numerical algorithms based on the theory of complex variables, Proc. ACM 22nd Nat. Conf., 4 (1967), 124–-134.

16
J. N. Lyness and C. B. Moler, Numerical differation of analytic functions, SIAM J. Numer. Anal., 4 (1967), 202–-210.

17
Joaquim R. R. A. Martins, Ilan M. Kroo, and Juan J. Alonso, An automated method for sensitivity analysis using complex variables. AIAA Paper 2000-0689 (Jan.), 2000.

18
Joaquim R. R. A. Martins, Peter Sturdza, and Juan J. Alonso. The complex-step deriva- tive approximation. Journal ACM Transactions on Mathematical Software (TOMS), 2003.

19
H. Murphy, H. Jaafari, and H.M. Dobrovolny, Differences in predictions of ODE models of tumor growth: a cautionary example. BMC Cancer, 16(1) (2016), 163.

20
A. Rohatgi, [WebPlotDigitizer], (2017), Retrieved from
http://arohatgi.info/WebPlotDigitizer

21
R.K. Sachs, L.R. Hlatky, and P. Hahnfeldt, Simple ODE models of tumor growth and anti-angiogenic or radiation treatment, Mathematical and Computer Modelling, 33(12-13), (2001),1297-1305.

22
G.A.F. Seber and C.J. Wild, Nonlinear Regression, J. Wiley & Sons, Hoboken, NJ, 2003.

23
J.A. Spratt, D. Von Fournier, J.S. Spratt, and E.E. Weber, Decelerating growth and human breast cancer, Cancer, 71(6) (1993), 2013-2019.

24
B. Tummers, [DataThief III], (2006), Retrieved from http://datathief.org/

25
Y. Tanaka, K. Hongo, T. Tada, K. Sakai, Y. Kakizawa, and S. Kobayashi, Growth pattern and rate in residual nonfunctioning pituitary adenomas: correlations among tumor volume doubling time, patient age, and MIB-1 index. Journal of Neurosurgery, 98(2) (2003), 359-365.

26
L. Von Bertalanffy, Problems of organic growth, Nature, 163(4135), (1949), 156-158.

How to Cite?

DOI: 10.12732/ijpam.v117i1.16 How to cite this paper?

Source:
International Journal of Pure and Applied Mathematics
ISSN printed version: 1311-8080
ISSN on-line version: 1314-3395
Year: 2017
Volume: 117
Issue: 1
Pages: 203 - 234


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